PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0044s0030.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 384aa    MW: 42250.2 Da    PI: 7.0967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0044s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09208255455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Kaladp0044s0030.1.p 208 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 255
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-11202259No hitNo description
SuperFamilySSF474592.62E-17202272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17204271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6208255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
METDLLPWTQ NPPATYCSPE MSFSNSTWDH FHSPPPPSAT AAGPAHLNLP MLQHQMPALA  60
ADPGFAERAA RFSCFGSRSF NARSHAQLPT PLDSLKLHRV ASCHFPGSAS PLQGIHIQHT  120
DNTKFPSDSR EESSVSQKVQ SSEPVGRKRK SVPRAKPKLV ESNDPDSKRT KSDENEKGGK  180
SNDNSKQPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK  240
AVMLDEIINY VQSLQQQVEF LSMKLATVNP GMDSVHLEDL LTKEILQARA AIYSVESSNS  300
ASAAFPFGLP NATTDSQFCS NSLNNDDQLR QSGHHQHGMQ LPSFNGFCNS ATQVSMWEDE  360
LHNVVQMGFA AGSTEPPQMK MEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438666.15e-93PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1S3XF901e-91A0A1S3XF90_TOBAC; transcription factor bHLH62-like
STRINGXP_009788675.18e-92(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-70bHLH family protein