PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0135.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 647aa    MW: 73963.3 Da    PI: 9.2723
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08468508239
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                          ++W +eE ell ++v+++++g   +W+ I++++g+gR+  +
  Kaladp0042s0135.1.p 468 KPWGKEEIELLRKGVQKYPKGtsrRWEVISEYIGTGRSVDE 508
                          69**********************************99765 PP
2Myb_DNA-binding28.43.8e-09589632344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                           W++  ++ l++a k ++++   +W+++a  ++ g+t +qck ++
  Kaladp0042s0135.1.p 589 QWSAVQEKALIQALKTFPKEanqRWERVATAVP-GKTVNQCKKKF 632
                          7********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.9E-2295202IPR001623DnaJ domain
SuperFamilySSF465655.23E-2098207IPR001623DnaJ domain
SMARTSM002711.2E-14100175IPR001623DnaJ domain
PfamPF002268.6E-18101180IPR001623DnaJ domain
CDDcd062571.90E-12101172IPR001623DnaJ domain
PROSITE profilePS5007618.243101183IPR001623DnaJ domain
PRINTSPR006254.6E-9106124IPR001623DnaJ domain
PRINTSPR006254.6E-9124139IPR001623DnaJ domain
PRINTSPR006254.6E-9155175IPR001623DnaJ domain
PROSITE patternPS006360160179IPR018253DnaJ domain, conserved site
PROSITE profilePS512937.347465520IPR017884SANT domain
SMARTSM007172.0E-6466519IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-7466510IPR009057Homeodomain-like
PfamPF002492.1E-7468509IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-5468509IPR009057Homeodomain-like
CDDcd001671.05E-4469509No hitNo description
PROSITE profilePS512939.41585640IPR017884SANT domain
SuperFamilySSF466893.36E-9586633IPR009057Homeodomain-like
SMARTSM007172.2E-8586638IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5589632IPR009057Homeodomain-like
PfamPF002497.1E-8589632IPR001005SANT/Myb domain
CDDcd001672.83E-6590636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MSKMVPAKNT FRLITYSKEI VNGEPIFVSS NCLPKKALKY EPAGHAFHEA AMRLGGFFEE  60
EQDGKVEEQN TSSDKEQYMP SSGSYSTKSK KKSGSESKEQ DHYALLNLSH LRYLATEEQI  120
RKSYRETALK YHPDKQAALL LSEETEAGKQ AKKEEIEAHF KSIQEAYEVL IDPIKRRIYD  180
STDEFDDEIP TDCAPQDFFK VFGPAFMRNG RWSVAQPVPS LGDDNAPLKE VDDFYNFWYG  240
FKSWREFPHA DEYDLEQAES RDHKRWMERQ NAKLSEKARK EEYVRIRSLV DNAYRRDPRI  300
VRRKEEEKAE KQRKKQAKYL AKQLEEEKAA KEAEEEKRRK EEEDKRAAEA NALQKKAKEK  360
EKKLLRKERS RLRTLSAAVV SQSHHNVAQD DIEGLCMSLG MDDLKNLCDK LEGKETKDQA  420
EILRIILGRK ATMEVAAHDN KKPLYQNGSA TQNGTVHLGG YEKKEREKPW GKEEIELLRK  480
GVQKYPKGTS RRWEVISEYI GTGRSVDEIL KATKTVLLQK PDSNKAFDSF LEKRKPSPSI  540
QSPLSTRDDI VGATKAPSAA VDTSNTGLTE QKAEKETSNG PPSSSDPDQW SAVQEKALIQ  600
ALKTFPKEAN QRWERVATAV PGKTVNQCKK KFALMKESFR SKKSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1919730020123Zuotin
5dje_B5e-1919730020123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain