PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0042s0080.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 311aa MW: 34566.9 Da PI: 6.3706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0042s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	87.6	2.2e-27	12	154	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee...........vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat 70 lppG+rFhP+d++l+ +yL kk + vikevd+ k++P dLp+ +k+++++wy + r+ k Kaladp0042s0080.1.p 12 LPPGCRFHPSDDQLIRYYLLKKNGNGAaaaA---AsddridgygfdVIKEVDVGKYNPFDLPEwccycyGYKGRKRHWYGYRMRAVK--- 95 79******************999885541...2445677777779***********6688865555566688888777665... PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgr.apkgektdWvmheyrl 128 +r r+t+sg+Wk g+ ++v+ +g + g + +++fy g+ a+ +++t+W mhey+l Kaladp0042s0080.1.p 96 -ERLVRMTASGFWKRRGRVRDVVGYgGGVVLGKRVSFAFYLGNlAEGAVRTNWYMHEYAL 154 .599**************9985677799999*986155557*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-33	5	168	IPR003441	NAC domain
PROSITE profile	PS51005	33.586	12	188	IPR003441	NAC domain
Pfam	PF02365	4.5E-16	13	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDRHAVADLP PLPPGCRFHP SDDQLIRYYL LKKNGNGAAA AAASDDRIDG YGFDVIKEVD 60 VGKYNPFDLP EWCCYCYGYK GRKRHWYGYR MRAVKERLVR MTASGFWKRR GRVRDVVGYG 120 GGVVLGKRVS FAFYLGNLAE GAVRTNWYMH EYALVDPKAF VLCRVFVKFR RGHASNASEH 180 ALCSFAHKNV GVQHDETVTS DVEGAKACDI NSVDRGIQTS SMSSGRMIDK DDMKDPGPDS 240 GFHLQLQSGS HLLAYPVGSS MTEHEKSSDG LILLGESSDV LTSEHLDCIL EEDFIELNDL 300 LSPLPENDDT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-17	12	168	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-17	12	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-17	12	168	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-17	12	168	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-17	12	168	20	168	NAC domain-containing protein 19
3swm_B	2e-17	12	168	20	168	NAC domain-containing protein 19
3swm_C	2e-17	12	168	20	168	NAC domain-containing protein 19
3swm_D	2e-17	12	168	20	168	NAC domain-containing protein 19
3swp_A	2e-17	12	168	20	168	NAC domain-containing protein 19
3swp_B	2e-17	12	168	20	168	NAC domain-containing protein 19
3swp_C	2e-17	12	168	20	168	NAC domain-containing protein 19
3swp_D	2e-17	12	168	20	168	NAC domain-containing protein 19
4dul_A	2e-17	12	168	17	165	NAC domain-containing protein 19
4dul_B	2e-17	12	168	17	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	5e-18	NAC domain containing protein 53

Link Out ? help Back to Top
Phytozome	Kaladp0042s0080.1.p