PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0534.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 319aa    MW: 35103.4 Da    PI: 8.1518
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0534.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.7e-2050111257
                          T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          ++R+t+t++q+++L++l+++   r p+ae++++++++l    +++ ++V++WFqN++a+e++
  Kaladp0040s0534.1.p  50 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 111
                          58*****************8678*************************************97 PP
2Wus_type_Homeobox113.79.5e-3749113265
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Kaladp0040s0534.1.p  49 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKR 113
                          689***************9779*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-729111IPR009057Homeodomain-like
SuperFamilySSF466893.46E-1132112IPR009057Homeodomain-like
PROSITE profilePS5007110.5646112IPR001356Homeobox domain
SMARTSM003891.8E-548116IPR001356Homeobox domain
PfamPF000464.4E-1751111IPR001356Homeobox domain
CDDcd000864.56E-751113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEAQQQQHNT MMGDDLGGGK LAATSFTRTQ TSSTNNNSLV NNNGGGSSSS TRWTPTTDQI  60
RILKDLYYNN GVRSPTAEQI QRISARLRQY GKIEGKNVFY WFQNHKARER QKRRFNTTST  120
TTNNNTAPAP LPPASTVWKP SSLDSSTPHI HTAAAAAASK YSDINNNQNL IYPAGHNQMS  180
GFGYAASVTM EKSFRDCSIS TGGSSFRWAK GGMADHHLSH HPCPHTSPYA IYNQRKSINS  240
DEYHELLAST SDHREHGDNR GAEIETLPLF PMHGEDINYG FCHLNSAETD GWFNRDVGGG  300
SRASLELSLN SYAGMDHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378227.13e-73PREDICTED: protein WUSCHEL
TrEMBLA0A445M4472e-71A0A445M447_GLYSO; Protein WUSCHEL
TrEMBLK7K4872e-71K7K487_SOYBN; Uncharacterized protein
STRINGXP_009378227.11e-72(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-30WOX family protein