PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0485.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 654aa    MW: 74264.6 Da    PI: 6.8512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0485.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.7e-52231492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          ppGfrFhPtdeelv +yLk+kv g++l+l ++i+e+d+yk++P dLp + k+k++++ w+fFs+rd+ky++g+r+nrat++gyWkatgkd
  Kaladp0040s0485.1.p  23 PPGFRFHPTDEELVLYYLKRKVCGRRLKL-DIIAETDVYKWDPVDLPgQsKLKTRDRLWFFFSHRDRKYPNGTRSNRATHHGYWKATGKD 111
                          8****************************.99**************96358888999********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++ +++ vglkktLvfykgrap+g++tdWvmhey+l
  Kaladp0040s0485.1.p 112 RLITC-NSRPVGLKKTLVFYKGRAPTGTRTDWVMHEYTL 149
                          *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5918172IPR003441NAC domain
PROSITE profilePS5100554.61522172IPR003441NAC domain
PfamPF023653.8E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MKMPSSSSLG TCSSRGNKKQ VWPPGFRFHP TDEELVLYYL KRKVCGRRLK LDIIAETDVY  60
KWDPVDLPGQ SKLKTRDRLW FFFSHRDRKY PNGTRSNRAT HHGYWKATGK DRLITCNSRP  120
VGLKKTLVFY KGRAPTGTRT DWVMHEYTLH EEELKRCHDV GDSFALYKVY KKSGPGPKNG  180
EQYGAPFKEE DWDEEECTEV GFNTAEAGNF LGPHNIPKAD MVREGVNLIG SADEIEGANI  240
GLFIEKDPVA RSISQHCDMG GSFDYFQSAA SQVVEAPDIT SGPNVSEMND FLADGDFLEA  300
NDLLGPEPIP SGEDIPLGNL WFDDTYDGLG EWDLFNDVDA SHPNSVFNGV DGMLNNFEYR  360
FEPRLDDTSI VTSEMWGNED LSRNGVSIVQ PAQCAVYLLY PYIRLMGFAD LIMVHLAITH  420
ISMLINCNPS GLIFHIIAFF RFHNRGKHIY FYPSRHQNQN GSTSYPQNSV VSALWAFVES  480
IPTTPASASE NILFNQAPDN VSSFSRAQSG DINSLATAGT IGPEENRRWF SRPSIFRLIP  540
GRFNMLSSRS FRNNHILMVE KQFKIEWKME GPANSRHTSK HLRKQQRKKE RVWTEVRKKI  600
GAPSTFGVAE QHNQAQNEFH GKDIQDYKKD EIHEVIVLEQ PLDKMKKFHL LAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-482314916140Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1586598RKKERVWTEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886100.11e-134NAC domain-containing protein 17-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-82NAC domain containing protein 17