PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0283.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23670.7 Da    PI: 8.2251
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0283.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.28.1e-221763349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         i+ k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+ gk + +
  Kaladp0040s0283.1.p 17 IQKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPAGKAFSF 63
                         7788889***********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-31766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.278767IPR002100Transcription factor, MADS-box
CDDcd002652.83E-35883No hitNo description
SuperFamilySSF554552.88E-27890IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-18929IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKKTSLGRQ RIEITKIQKK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPAGKA  60
FSFGHPNVES IIQKYLDHPS GAAADAHPTS ATRELNNQLT QVTSELEAER KKSEAFTNLR  120
SSNAGQFWWE APVEEMGWEE LEQLRHWLSQ LKRSVAMAIS VQAESFTTTS SATGFGNYLF  180
GNLFEDKASD MLLAAVESTS ALTYNYGYGN AFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16794192MEF2 CHIMERA
6byy_B1e-16794192MEF2 CHIMERA
6byy_C1e-16794192MEF2 CHIMERA
6byy_D1e-16794192MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.17e-71agamous-like MADS-box protein AGL62
TrEMBLA0A2N9J8T03e-69A0A2N9J8T0_FAGSY; Uncharacterized protein
STRINGXP_009621249.17e-66(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-52AGAMOUS-like 61