PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0040s0265.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 25321.5 Da PI: 9.6057 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++sF++ L H r+H Kaladp0040s0265.1.p 140 HECSICHRSFPTGQALGGHKRLH 162 78*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.28E-7 | 90 | 162 | No hit | No description |
SMART | SM00355 | 0.075 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.0E-11 | 90 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.1 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.619 | 140 | 162 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-12 | 140 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MALEALNSPS TAHQLRFEEP EHHLFDKMSK GKRSKRSRSE ISNGNSAEEE YLAWCLIMLA 60 RGVSGRSETV KKQTTTPKPQ PLAAALILSH KCSVCHKAFP SHQALGGHKA SHRKNTASPD 120 NDSAASIVTV AALPPGARSH ECSICHRSFP TGQALGGHKR LHYDGGNSSS SAVATTSSDG 180 AAGPSRGFDL NLPALPDMRS IIGVNMKKSQ WAVEEEVESP HPSKKPRMFD VGLGQQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002264302.1 | 6e-65 | PREDICTED: zinc finger protein ZAT10 | ||||
TrEMBL | A0A438C902 | 1e-63 | A0A438C902_VITVI; Zinc finger protein ZAT10 | ||||
TrEMBL | F6H663 | 1e-63 | F6H663_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0091g00690.t01 | 2e-64 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 2e-35 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0040s0265.1.p |