PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0592.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 363aa    MW: 41091.1 Da    PI: 5.0458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0592.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0689112226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          k  lC ff + G+C  G +CkF+H+
  Kaladp0039s0592.1.p  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                          6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.84E-687112IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-589112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.056157195IPR000571Zinc finger, CCCH-type
SMARTSM003562.7157194IPR000571Zinc finger, CCCH-type
PfamPF165436.3E-18215294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPPKQAKADI AKKQKQVEDK TFGLKNKNKS KNVQKYVQSL NQSVQPKVDP SKVAAKKKKE  60
EEKAREKELN ELFKVAISQP KVPPGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNIQRKGE  120
KIDIYSDKRD DETMEDWDQE TLEKVVASKG KEYNQNKPTE IVCKYFLDAV EKKQYGWFWV  180
CPNGGKECHY RHALPPGYIL KSQMKALLEE ERDRIPIEEE IENQRSKVAT TTPMTPELFY  240
QWKKKKVDEK EAGIAAQRAD RAKNDRMSGR ELFLSDASLF VDDAEAYDNY QREEQPESGE  300
QKAQESSVAA AGPSSSAHAV DEPADDIPDV DVDDDDELDL DELNELEASL SKSSIHIQEP  360
GA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017238516.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2R6R7Z00.0A0A2R6R7Z0_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_002525195.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]