PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0587.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 129aa MW: 13662.8 Da PI: 10.3008

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0587.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.7	1.1e-20	67	114	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l+ Kaladp0039s0587.1.p 67 PCAACKILRRRCADKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQV 114 7********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.19	66	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-19	67	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MESIISNGKT TPPALTITPT TFNSFSSSFS SSPSSSSSPP SSHSSPTTAL PPASPLPPQP 60 QVIVMSPCAA CKILRRRCAD KCVLAPYFPP TDPLKFTIAH RVFGASNIIK FLQVPLKSTS 120 HFLSFWAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-16	66	112	10	56	LOB family transfactor Ramosa2.1
5ly0_B	5e-16	66	112	10	56	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013726732.1	2e-33	LOB domain-containing protein 11-like
TrEMBL	A0A2U1NPQ8	3e-31	A0A2U1NPQ8_ARTAN; LOB domain-containing protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-32	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Kaladp0039s0587.1.p