PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0544.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 258aa MW: 29061.8 Da PI: 10.1159 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.7 | 5.5e-20 | 17 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++ + q+++Lee+++ r+p+a +++++A++l +++ ++V++WFqN++a+e++ Kaladp0039s0544.2.p 17 TRWNPAPGQIQALEEMYRCgLRTPTALQIQQIASQLrkfgKIEGKNVFYWFQNHKARERQ 76 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 109.1 | 2.6e-35 | 16 | 78 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+P p Qi+ Lee+y++GlrtP++ +iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Kaladp0039s0544.2.p 16 GTRWNPAPGQIQALEEMYRCGLRTPTALQIQQIASQLRKFGKIEGKNVFYWFQNHKARERQKR 78 68***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.26E-11 | 12 | 77 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.9E-5 | 14 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.90E-4 | 17 | 78 | No hit | No description |
Pfam | PF00046 | 1.6E-17 | 17 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 18 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.203 | 25 | 77 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MDKKELNESV QTLGTGTRWN PAPGQIQALE EMYRCGLRTP TALQIQQIAS QLRKFGKIEG 60 KNVFYWFQNH KARERQKRCR EFKSPASKQP KPTVPSLQQQ CCSQAMKSRK DSPLAMKRNC 120 AEQNSNSSWG HSTSHSLTLS RESVMYMHMQ RAAAVVSHGS KQSVADGEAT VGSRRHAATW 180 QVVQWSPAHL HILHPLEFIA SNNLAQFNGV TVREDGAGEV ETLQLFPTRN EECWSEARVD 240 QRGAKNISTP VHFFQFL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 5e-29 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0544.2.p |