PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0544.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 302aa MW: 33523.9 Da PI: 9.7761

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0544.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.3	7.2e-20	61	120	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++ + q+++Lee+++ r+p+a +++++A++l +++ ++V++WFqN++a+e++ Kaladp0039s0544.1.p 61 TRWNPAPGQIQALEEMYRCgLRTPTALQIQQIASQLrkfgKIEGKNVFYWFQNHKARERQ 120 7***************99************************************97 PP
2	Wus_type_Homeobox	108.7	3.4e-35	60	122	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+P p Qi+ Lee+y++GlrtP++ +iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Kaladp0039s0544.1.p 60 GTRWNPAPGQIQALEEMYRCGLRTPTALQIQQIASQLRKFGKIEGKNVFYWFQNHKARERQKR 122 68***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.45E-11	56	121	IPR009057	Homeodomain-like
SMART	SM00389	8.9E-5	58	125	IPR001356	Homeobox domain
CDD	cd00086	2.47E-4	61	122	No hit	No description
Pfam	PF00046	2.2E-17	61	120	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.9E-7	62	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.203	69	121	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVGFCSGIDL GNICDSRKLL GLTASSSSST KTSGVHSVIA VDHQMDKKEL NESVQTLGTG 60 TRWNPAPGQI QALEEMYRCG LRTPTALQIQ QIASQLRKFG KIEGKNVFYW FQNHKARERQ 120 KRCREFKSPA SKQPKPTVPS LQQQCCSQAM KSRKDSPLAM KRNCAEQNSN SSWGHSTSHS 180 LTLSRESVMY MHMQRAAAVV SHGSKQSVAD GEATVGSRRH AATWQVVQWS PAHLHILHPL 240 EFIASNNLAQ FNGVTVREDG AGEVETLQLF PTRNEECWSE ARVDQRGAKN ISTPVHFFQF 300 L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-29	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Kaladp0039s0544.1.p