PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0505.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 274aa    MW: 31001.3 Da    PI: 6.7182
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0505.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-171966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd  l++ ++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Kaladp0039s0505.1.p 19 RGSWTVEEDTMLIHHITAHGEGNWNSLARSSGLKRTGKSCRLRWLNYL 66
                         89********************************************97 PP
2Myb_DNA-binding45.71.5e-1472116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E   + +++ ++G+ +W++Ia+ ++ gRt++++k++w++
  Kaladp0039s0505.1.p  72 RGNLTPQEKSTIFQLHSKWGNSRWSKIAQQLP-GRTDNEIKNYWRT 116
                          7999****************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-221269IPR009057Homeodomain-like
PROSITE profilePS5129422.2471470IPR017930Myb domain
SuperFamilySSF466895.99E-2817114IPR009057Homeodomain-like
SMARTSM007172.8E-141868IPR001005SANT/Myb domain
PfamPF002491.5E-141966IPR001005SANT/Myb domain
CDDcd001672.08E-102166No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2270120IPR009057Homeodomain-like
PROSITE profilePS5129416.64971122IPR017930Myb domain
SMARTSM007179.0E-1271120IPR001005SANT/Myb domain
PfamPF002492.2E-1372116IPR001005SANT/Myb domain
CDDcd001671.16E-1076116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSARNCGADE PVQQSELRRG SWTVEEDTML IHHITAHGEG NWNSLARSSG LKRTGKSCRL  60
RWLNYLKPDI KRGNLTPQEK STIFQLHSKW GNSRWSKIAQ QLPGRTDNEI KNYWRTRMQN  120
QARQLKRVQS DRFLESVRGF WVPTTTLDVK GDADYSSLVS NSSSQQQLKN RHHHPLSCSS  180
PSSFVFPREA DDSMGFLELK TVVDSPSANT TAGAYKYPEF YHSLEDLSFA TTMSAAAAAD  240
DDCGLLQAAR DDWMADDETT DTAWNTDELW QFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241012218128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028063702.12e-78transcription factor MYB62-like
TrEMBLA0A3S3QHZ93e-73A0A3S3QHZ9_9MAGN; Transcription factor MYB108-like protein
STRINGEOY001195e-72(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-64myb domain protein 62