PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0287.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 343aa    MW: 39243.7 Da    PI: 5.5058
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-194592148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l  +++q+G g+W++ ar  g++Rt+k+c++rw++yl
  Kaladp0039s0287.1.p 45 RGPWTDEEDHILSSYIAQHGEGRWNSLARSAGLNRTGKSCRLRWLNYL 92
                         89********************************************97 PP
2Myb_DNA-binding49.97.2e-1698141146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ + eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Kaladp0039s0287.1.p  98 RGNISLEEQLLILDLHSRWGNR-WSKIAKYLP-GRTDNEIKNYWRT 141
                          78899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9084096IPR017930Myb domain
SuperFamilySSF466891.57E-3043139IPR009057Homeodomain-like
SMARTSM007172.0E-144494IPR001005SANT/Myb domain
PfamPF002496.1E-174592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-224699IPR009057Homeodomain-like
CDDcd001675.07E-114792No hitNo description
SMARTSM007175.0E-1497145IPR001005SANT/Myb domain
PROSITE profilePS5129417.88597147IPR017930Myb domain
PfamPF002492.5E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-22100145IPR009057Homeodomain-like
CDDcd001677.03E-11102141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNNHHDGRGV FTANNNSSSS SSSSWSKQSQ EEEHEDVMME EDLRRGPWTD EEDHILSSYI  60
AQHGEGRWNS LARSAGLNRT GKSCRLRWLN YLRPDVRRGN ISLEEQLLIL DLHSRWGNRW  120
SKIAKYLPGR TDNEIKNYWR TRVQKHAKLL KCDVNSQQFR DAIRYLWMPR LVERIHGAAS  180
ATDDIHNTTT TCLFHHNNNN NHTAAGFTNP SGMMREDEPY GSYLQHQQVS PFSDLMDDYA  240
PADDINSEYY YNGGAGNDSA VKAVGFDCNN YIDQTGVMMG YGGGDQMHPN NNNNSNSDNG  300
WLMMQSGDVS DSMWSLDDFW FNNSQPPQQD YQQQQFNTNS FS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-243813920120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027944.11e-89PREDICTED: transcription factor MYB108-like
RefseqXP_021893513.12e-89transcription factor MYB108-like
TrEMBLB9HIK16e-87B9HIK1_POPTR; Uncharacterized protein
STRINGevm.TU.contig_30289.26e-89(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.15e-82myb domain protein 112