PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0249.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 18518.1 Da PI: 9.9736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 3e-21 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g Kaladp0039s0249.1.p 16 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDTAARSLRG 65 69*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.117 | 16 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.6E-14 | 16 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-23 | 16 | 74 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.53E-28 | 16 | 72 | No hit | No description |
SMART | SM00380 | 6.3E-40 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 16 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSAAAGGGGG GGGEGHYRGV RKRPWGRYAA EIRDPWKKTR VWLGTFDTPE EAALAYDTAA 60 RSLRGPKAKT NFPPQPPPSS PPPPPLSLDL NPPRWAALVH HRPQPLSFSE FLRTDALAPR 120 CCPDPLPSDS ASFPSGFPPM QRLQALELFR DAKPPRGLAI DLNEPPPLWM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-23 | 6 | 80 | 4 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449387.1 | 6e-49 | ethylene-responsive transcription factor 12 | ||||
Refseq | XP_006467752.1 | 6e-49 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 1e-39 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A067GG80 | 1e-47 | A0A067GG80_CITSI; Uncharacterized protein | ||||
TrEMBL | B8YM26 | 1e-47 | B8YM26_CITUN; Putative ethylene responsive element binding protein 1 | ||||
TrEMBL | V4U9J0 | 1e-47 | V4U9J0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006467752.1 | 2e-48 | (Citrus sinensis) | ||||
STRING | XP_006449387.1 | 2e-48 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-37 | ERF domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0249.1.p |