PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0125.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 235aa    MW: 26908.7 Da    PI: 9.7497
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0125.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1202.2e-37201451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+Ptdee+v +yLk kv g +l++ +vi+e+++++++Pw+Lp    ++e++ yfF++++ + +  + + ra+++gyWk+tg+d+
  Kaladp0039s0125.1.p  20 LPPGFRFEPTDEEIVFQYLKCKVFGLPLPA-SVIPEINLCRYHPWELP---GESEQDKYFFCHKNMNVS--RSNCRAARNGYWKSTGEDR 103
                          79****************************.99***************...3467889*****998775..5778999************ PP

                  NAM  91 evlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           ++s+   +++ +gl+kt vf +g ++ +++++dW+mhey+l
  Kaladp0039s0125.1.p 104 LIISSstvDDRIIGLRKTSVFCRGkSSWESTRSDWIMHEYHL 145
                          ***987777778**********994556889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-4316180IPR003441NAC domain
PROSITE profilePS5100543.07420180IPR003441NAC domain
PfamPF023651.3E-2221145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRVMEKEKQL NFVRDGVCKL PPGFRFEPTD EEIVFQYLKC KVFGLPLPAS VIPEINLCRY  60
HPWELPGESE QDKYFFCHKN MNVSRSNCRA ARNGYWKSTG EDRLIISSST VDDRIIGLRK  120
TSVFCRGKSS WESTRSDWIM HEYHLLFTCS SARCKSQAGN SRQSFLMMKE GWTICHIFQK  180
NKKPRSCKSV TRNKRTRDFD SADGFKFLKL DNGGKTTPSS SSSSSSSVTE KYSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-282018117166NO APICAL MERISTEM PROTEIN
1ut4_B3e-282018117166NO APICAL MERISTEM PROTEIN
1ut7_A3e-282018117166NO APICAL MERISTEM PROTEIN
1ut7_B3e-282018117166NO APICAL MERISTEM PROTEIN
3swm_A3e-282018120169NAC domain-containing protein 19
3swm_B3e-282018120169NAC domain-containing protein 19
3swm_C3e-282018120169NAC domain-containing protein 19
3swm_D3e-282018120169NAC domain-containing protein 19
3swp_A3e-282018120169NAC domain-containing protein 19
3swp_B3e-282018120169NAC domain-containing protein 19
3swp_C3e-282018120169NAC domain-containing protein 19
3swp_D3e-282018120169NAC domain-containing protein 19
4dul_A3e-282018117166NAC domain-containing protein 19
4dul_B3e-282018117166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125006.11e-60NAC domain-containing protein 83-like
RefseqXP_027168314.11e-60NAC domain-containing protein 83-like
TrEMBLA0A068V2V03e-58A0A068V2V0_COFCA; Uncharacterized protein
STRINGPOPTR_0012s10530.11e-56(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.19e-47NAC domain containing protein 83