PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0078.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23706.8 Da PI: 9.0527 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.8 | 2e-34 | 10 | 104 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++r++C ++C+lapyfp++++++f++vhk+FG sn++k++++l+ee++++a++sl++eA +r++dPv G +g +++l +l+ Kaladp0039s0078.1.p 10 ACAACKHQRKRCDEKCILAPYFPSDRTREFQAVHKVFGLSNLQKMVRSLSEEDKRRATDSLIWEAFCRQKDPVLGPYGEYRRLFDELKLY 99 7***************************************************************************************99 PP DUF260 91 kaela 95 k++l+ Kaladp0039s0078.1.p 100 KSQLQ 104 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.527 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-33 | 10 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MERGSATRTA CAACKHQRKR CDEKCILAPY FPSDRTREFQ AVHKVFGLSN LQKMVRSLSE 60 EDKRRATDSL IWEAFCRQKD PVLGPYGEYR RLFDELKLYK SQLQLPIQVS NFGTNNINGA 120 VTDHQFGTPN NNVALLNYVQ KNAGFASNQF TCSPHHKSPK GQGEIGSIIL PLQQRHLVNG 180 YNQQYCVKGQ FSPMNGEATT MESITWEGGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010688578.1 | 2e-61 | PREDICTED: LOB domain-containing protein 2 | ||||
TrEMBL | A0A2P5E7R6 | 1e-57 | A0A2P5E7R6_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010688578.1 | 8e-61 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-47 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0078.1.p |