PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0513.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 334aa    MW: 37004.1 Da    PI: 7.4054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0513.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.4e-31135193259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqK++kgs+fpr+YYrC+ + gCp++k+ver+++dp+++++tY+ eHnh+
  Kaladp0037s0513.1.p 135 DDTWSWRKYGQKPIKGSPFPRGYYRCSGSkGCPARKQVERNRSDPSMFIVTYTAEHNHP 193
                          8**************************888****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.086129195IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-31131195IPR003657WRKY domain
SuperFamilySSF1182907.98E-27133195IPR003657WRKY domain
SMARTSM007744.7E-38134194IPR003657WRKY domain
PfamPF031066.1E-27135193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDEDWDLHAV VRGCRVSSLT DSKQAAAAAL DDHTASDRLG CFLYNSKSLD HQLPLPPPPQ  60
PQEDLCDLYR PFFLPLSSAV VGSVSPPPQL TTMPKTPDQG QPPHNNASTA TPRSKRRKNQ  120
LKKVRHVPAE GLSSDDTWSW RKYGQKPIKG SPFPRGYYRC SGSKGCPARK QVERNRSDPS  180
MFIVTYTAEH NHPPPTHRNS LAGTTRHQHK LDTFPPASTI QQQHPKPATS TSSAFTSTSS  240
SGDDEDDSTD VRQSTKTENQ FEDLAMELGL HQHSKNNMDM TPTDDFFDGL DEIAPPPRSS  300
RLDGFPLSWL ANSTGQQAVK KQKVVELEQQ VVW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23118196280Disease resistance protein RRS1
5w3x_D5e-23118196280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P6SHY32e-68A0A2P6SHY3_ROSCH; Putative transcription factor WRKY family
STRINGcassava4.1_027012m3e-68(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-60WRKY family protein