PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0484.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 261aa    MW: 28752.2 Da    PI: 5.4158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0484.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-151966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd +lv +v+++G  +W+  ++  g+ R++k+c++rw++yl
  Kaladp0037s0484.1.p 19 KGAWSVEEDIKLVAYVTKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 66
                         79******************99************************97 PP
2Myb_DNA-binding47.73.5e-1572114145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+ T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w+
  Kaladp0037s0484.1.p  72 RGNYTKEEEDTIIRLHESVGNK-WSVIAAQLP-GRTDNEIKNHWH 114
                          899*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8971466IPR017930Myb domain
SuperFamilySSF466892.11E-2916113IPR009057Homeodomain-like
SMARTSM007178.8E-91868IPR001005SANT/Myb domain
PfamPF002494.3E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-222073IPR009057Homeodomain-like
CDDcd001671.21E-82166No hitNo description
PROSITE profilePS5129423.00667121IPR017930Myb domain
SMARTSM007172.5E-1471119IPR001005SANT/Myb domain
PfamPF002495.1E-1472114IPR001005SANT/Myb domain
CDDcd001673.21E-1074114No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2474121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRRPATATA APIESGLRKG AWSVEEDIKL VAYVTKYGCW NWRQLPKFAG LARCGKSCRL  60
RWLNYLKPDL KRGNYTKEEE DTIIRLHESV GNKWSVIAAQ LPGRTDNEIK NHWHGKLKKM  120
LKTTPSLKDK SKATSSSLTS EEVSSTCSTY KGLTDLEADK TPTDDSVSCC LQGQQKQSSS  180
SSASSSSDDM YSDMSGDLWK DPFVADGAYN YVGPADDYFH YVDSFAAAAD IGYEGLLSFP  240
CPSDVPTADE DEFLVPLWLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26171235110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889531.11e-68transcription factor MYB14-like
TrEMBLA0A1U8JVI86e-66A0A1U8JVI8_GOSHI; myb-related protein Myb4-like
STRINGEOX992622e-65(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.16e-52myb domain protein 13