PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0297.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 545aa MW: 60751.6 Da PI: 8.4974 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.4e-20 | 31 | 86 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 rkR t+ qle+Lee++e ++yp+ ++r +A+k+gLte+qV+ WF+ rR k+k+ Kaladp0037s0297.1.p 31 RKRKLKTPAQLEALEEYYEDHKYPTDSMRSAIAEKIGLTEKQVSGWFCHRRLKDKR 86 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 12 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.74E-17 | 26 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.665 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-20 | 29 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.83E-18 | 31 | 86 | No hit | No description |
Pfam | PF00046 | 1.6E-17 | 31 | 86 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MDKVVYLLPD SDADSLDGRA EEDKTPVETS RKRKLKTPAQ LEALEEYYED HKYPTDSMRS 60 AIAEKIGLTE KQVSGWFCHR RLKDKRLSKD ETLGSGRMER SSGVIQEHFS GPGQDSCGST 120 KPGEYKNADM RDVESQLLAG QELSPMKLAY HNRMNTGSLD GDMDDTSSES SSPLRPSHLP 180 QRDVPQRWEN LRYSIPKGPA VPSNPKVAIG GQFRRPSGYL KIKPKAEHPA ITAVKRQLGM 240 NFRVDGPPLG IEFQPPPVDA FQAGPKDTAT GPRDGIGSLV PNISGSSYHG AQFRRKMHDG 300 SFKPDHSYLK EEGPRVNHGS ELFYSHHQSR PKYSVSDNIK LDHGWGPSPN LDKEYAEEAY 360 GSKRNLFNEE KYGSKGLRIQ PISSVPFQPS HNISGVNPMI AQRSKYLKNK LSDTKSRQRE 420 PRDTFERRMY AREPEIEKHH SVSSNTSERP NLIPVTATPE YKLMDKQLVA ARNDPVEYPN 480 PNSEQIGVYN NELKDKKARF GYSQPDFGKT MSLAINRGKG AAGAIPSSFS EDETGETSSS 540 GDDE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 3e-56 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0297.1.p |