PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0033s0238.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26389.2 Da PI: 9.7287 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.3 | 2.8e-13 | 21 | 106 | 8 | 99 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 d l ++l++p +f+ ++ +g+ + tl + s We + ++ +++++++GW++F +++ L + ++F+++g++ f +v+v Kaladp0033s0238.1.p 21 RDDLHAKNLRVPPQFM-KYlSGD--LTDHATLITHSTACWEAAI--SRAEETIYFKGGWENFFEDHSLGHDELLMFTYKGNMHF--HVRV 103 45555566********.555666..44579999***********..**********************************9*99..9999 PP E-S CS B3 97 frk 99 f + Kaladp0033s0238.1.p 104 FGR 106 876 PP | |||||||
2 | B3 | 47.9 | 2.5e-15 | 150 | 227 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp + ++++ ++++++ t ++ gr+W+vk+ ++ g++ ++kGW++Fv++n+Lk gD++ F+ + + el+v+vfr Kaladp0033s0238.1.p 150 LPIPTTANMILNPPREATNFVMRCGGRVWDVKC-LQNAAGKHRFSKGWRNFVRDNELKPGDTCAFE--QVATYELRVTVFR 227 566666566677778888899999*********.7899999*************************..4478888999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-18 | 10 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-19 | 13 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.19E-10 | 14 | 104 | No hit | No description |
PROSITE profile | PS50863 | 10.63 | 14 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-10 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.7E-10 | 19 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-19 | 127 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-20 | 128 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.90E-17 | 133 | 227 | No hit | No description |
SMART | SM01019 | 0.0031 | 135 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.52 | 135 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.9E-13 | 150 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MATRSRSVNS GKEKSFIAIM RDDLHAKNLR VPPQFMKYLS GDLTDHATLI THSTACWEAA 60 ISRAEETIYF KGGWENFFED HSLGHDELLM FTYKGNMHFH VRVFGRDRCL RTQNARPQIQ 120 RQLPGESFTS SFPHFKICLR KSSFQPFYLL PIPTTANMIL NPPREATNFV MRCGGRVWDV 180 KCLQNAAGKH RFSKGWRNFV RDNELKPGDT CAFEQVATYE LRVTVFRC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 1e-12 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0033s0238.1.p |