PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0033s0181.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 819aa MW: 90163.1 Da PI: 9.2661 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.6e-06 | 116 | 135 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+f G C++G++C+F H+ Kaladp0033s0181.1.p 116 CRDFTS-GRCRRGSNCPFLHS 135 777777.*************8 PP | |||||||
2 | zf-CCCH | 19.3 | 2.1e-06 | 207 | 227 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ffa+ G C+ G +C+F+H Kaladp0033s0181.1.p 207 PCTFFAA-GNCRNGKSCRFSHH 227 7999999.*************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0019 | 110 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-5 | 112 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 115 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0035 | 202 | 228 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.286 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-5 | 205 | 227 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 819 aa Download sequence Send to blast |
MAENDVKYPT DTKDVRSKYE VATSVREHAS GNRGTWRDNS LDRGNRGFSE AGTDWDEDGG 60 RRDFVRSPRS SWKRPLRSTS RGRSRSRSRS PIRAYRLESG VDARPRSKAE VPIQTCRDFT 120 SGRCRRGSNC PFLHSSTHNY EDRRYDFEHR EESVRGGKYS QFNASDGCYN DYNKETSEPK 180 REYDRNSRGT SFNHGGDRDP RRSADIPCTF FAAGNCRNGK SCRFSHHISS SSSSGGRTHD 240 GRWRTNHSPE KAGQMDRGTK FSDHVDTHTD YGKEGRSRTN RSPDRVDQGV KSSETADPNL 300 VEYGKESHGK VVSPQPRSIS SSMNSRWGNN IETSYVPPGG PTIMDKVVEV EANQSSQWKT 360 ENPGSLTRAS EMKGVDNWIG DKMSPEWNPK VSSVRTVAVE EPAYAIQTSE SVNHNVPPQA 420 SQLTHYVSSV TPDVLEKPNF QQGFNSINDA PTALSYDRNT GSNVVMNFNS SFLSSNSAQP 480 GSHSGPNEAP GNLNALGQGQ FSLTTSHPGN ENASAIRNST ANYDMYSITS NCEDPKVSEA 540 ISGATPASNM VSQAQLAQLT DLSASLAHLL GKGQQLPQFY AALNPPNPVA SLEISNGIVS 600 QFPVESVLPH PHIGSDKPYG PVCDNALQIQ PNISTMPTQY PLNPGVVRTM EDVKQEVPSR 660 ELNAGEAYKN GHAEGNLSQK PDTDSKSNKK PKSMLDESSK GKDKHAKPRE GSPLENMDGV 720 GKGDGGKKVK DTKALRDFKH GLVNFVKELL KPAWKDGQID KEGFKTIVKK VTDKVTATIQ 780 EANIPQTPEK VNHYLSASKP KLTKLVQAYV DRHHKKQT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RGRSRSRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0033s0181.1.p |