PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0033s0140.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 161aa MW: 18570.1 Da PI: 10.1569 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 127 | 2.6e-39 | 45 | 142 | 71 | 170 |
YABBY 71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 e+++ +e++ k ++++ + + ++ e+l++ ++++++ +++PPekrqrvPs ynrfi+eeiqrika+nPdi+hr+afsaaaknW Kaladp0033s0140.2.p 45 ESEQEREQEHHRKPTMMQIQ--QPKRVDEMLNTFSKQKTSLFASINKPPEKRQRVPSVYNRFIREEIQRIKAGNPDITHRQAFSAAAKNW 132 22333333333333333333..3334445677888888888889********************************************** PP YABBY 161 ahfPkihfgl 170 a+fP+ihfgl Kaladp0033s0140.2.p 133 AYFPHIHFGL 142 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-36 | 40 | 142 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.69E-7 | 85 | 135 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGALLVPPQP SSNHQYHPIH NPPPSLHQEE LYVVNTVMNN SAAAESEQER EQEHHRKPTM 60 MQIQQPKRVD EMLNTFSKQK TSLFASINKP PEKRQRVPSV YNRFIREEIQ RIKAGNPDIT 120 HRQAFSAAAK NWAYFPHIHF GLMPEELHQP VTKKPNLLSR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315817.1 | 5e-36 | axial regulator YABBY 1-like | ||||
Refseq | XP_020411971.1 | 6e-36 | axial regulator YABBY 1 isoform X1 | ||||
TrEMBL | A0A251QFS5 | 1e-34 | A0A251QFS5_PRUPE; Uncharacterized protein | ||||
TrEMBL | D9ZJG4 | 1e-34 | D9ZJG4_MALDO; YABBY domain class transcription factor | ||||
STRING | XP_008364377.1 | 2e-35 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-35 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0033s0140.2.p |