PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0033s0132.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 288aa MW: 31956.1 Da PI: 7.1407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.9 | 1.1e-24 | 214 | 268 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s +pr Ct+ gC+vkk+ver +ed ++v++tYeg+H h+ Kaladp0033s0132.2.p 214 LDDGYKWRKYGQKVVKNSLHPR----CTQMGCRVKKRVERLSEDCRMVITTYEGRHSHP 268 59*******************6....********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.6E-27 | 199 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-23 | 206 | 270 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.545 | 209 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-30 | 214 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-18 | 215 | 268 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MEGGGGGREF VFGSRDDDHQ GSIFSTHPRQ MELHHNNDDF LAASSSSAPA AANNRHVFTL 60 LSHHPNSSST STPATACVAA AGGSTMAMGF INCHNEEEEK DDDQHLFAAH DNRLLNAWKT 120 VYHQQHGLRS TILDPREADG VGNNEEDYHG DDTQTTKNSH SWWRRCPASS SSEKITSKAA 180 SGKISGSSTG VVKMRRKLRE PRFCFQTRTD IDVLDDGYKW RKYGQKVVKN SLHPRCTQMG 240 CRVKKRVERL SEDCRMVITT YEGRHSHPPP PPDDANSSDH DPCFSSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 205 | 270 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 205 | 270 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00618 | PBM | Transfer from AT2G44745 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017604132.1 | 1e-53 | PREDICTED: probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-51 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A151QW85 | 9e-52 | A0A151QW85_CAJCA; Putative WRKY transcription factor 12 | ||||
STRING | Gorai.004G069500.1 | 4e-52 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44745.1 | 3e-44 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0033s0132.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|