PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0033s0093.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 204aa    MW: 22326 Da    PI: 8.7361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0033s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.4e-18654153
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                         ++++GVr+++ +g+Wv+eIr+p        +r +lg+f taeeAa+a+++a+  +
  Kaladp0033s0093.1.p  6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRLWLGTFETAEEAARAYDQAAVLM 54
                         59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-33666No hitNo description
PROSITE profilePS5103221.865764IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-20765IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-32764IPR001471AP2/ERF domain
PfamPF008472.2E-11751IPR001471AP2/ERF domain
SMARTSM003801.4E-38770IPR001471AP2/ERF domain
PRINTSPR003672.2E-10819IPR001471AP2/ERF domain
PRINTSPR003672.2E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVQGNKKFRG VRQRHWGSWV SEIRHPLLKR RLWLGTFETA EEAARAYDQA AVLMSGRNAK  60
TNFPIDQTDH NPNDSPNDKK GGLSRSSSSN NMTLSEILHA KLKKCTKALS PSLTCLRLDT  120
EKSNIGVWQK RAGSGSDANW VMTVELGGES AVKGEGGGVN KGSTGMGFGM EWKSEDENAG  180
GETVKNDEER IALQMIEELL FSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16665464ATERF1
3gcc_A4e-16665464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475843.11e-80ethylene-responsive transcription factor WIN1
SwissprotQ9XI332e-69WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A067GKV62e-79A0A067GKV6_CITSI; Uncharacterized protein
TrEMBLA0A2H5QF582e-79A0A2H5QF58_CITUN; Uncharacterized protein
STRINGXP_006475843.14e-80(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-59ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]