PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0033s0081.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 336aa MW: 37287.8 Da PI: 7.3391 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.8e-08 | 85 | 109 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f G C+ G++C+FaHg Kaladp0033s0081.4.p 85 FKTRVCAKFKL-GLCRNGENCNFAHG 109 69*********.*************9 PP | |||||||
2 | zf-CCCH | 30.5 | 6.2e-10 | 145 | 168 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + C+yGdrC+F H Kaladp0033s0081.4.p 145 KMKLCKKFSNGEVCPYGDRCNFLH 168 889*******66************ PP | |||||||
3 | zf-CCCH | 31.5 | 3e-10 | 229 | 255 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f ++G+C++Gd+C FaHg+ Kaladp0033s0081.4.p 229 WKTKLCCKFEANGFCSFGDKCGFAHGR 255 8************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-14 | 80 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-8 | 82 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-5 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-6 | 85 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-7 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-10 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 145 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.55E-8 | 226 | 255 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-11 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 228 | 255 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 229 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-7 | 229 | 255 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MSFPESQSPF VPPGLGASSD AIQVSFWQQY SINNQDYNNN AKFQQPRPPK RPREEENQSD 60 NVVIVPQRMP SSSIPVNKGI TNIFFKTRVC AKFKLGLCRN GENCNFAHGV EDLRQPPPNW 120 QELVGGREED RGSGNWDDEQ RIALKMKLCK KFSNGEVCPY GDRCNFLHED PKRLRDDSDS 180 VRFRESSAIH IGSKVNTAAG HGSGLDLADA NLFNTGSDAY RMNVRIEHWK TKLCCKFEAN 240 GFCSFGDKCG FAHGRAAELQ GPVVRPEGEL RSCGAFNTSM NPVVGPPNDI SSGIVDNAIL 300 NEEQTGKKDF SKLKGSKKIN RIYADWIDDL PLDAP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021276339.1 | 1e-114 | zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | B9SEP0 | 1e-111 | B9SEP0_RICCO; Uncharacterized protein | ||||
STRING | XP_002524459.1 | 1e-111 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-72 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0033s0081.4.p |