PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0051.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 687aa    MW: 75283.6 Da    PI: 6.4635
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07278298526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Kaladp0032s0051.1.p 278 PCPDFRK-GACRRGDMCEYAHG 298
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484036.22E-1628134IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-1053126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.10457164IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00215787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.207.4E-1757141IPR020683Ankyrin repeat-containing domain
CDDcd002045.89E-1559135No hitNo description
PROSITE profilePS5008811.11492127IPR002110Ankyrin repeat
SMARTSM002488.0E-492124IPR002110Ankyrin repeat
SMARTSM003564.0E-6273299IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5278298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4278300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582278300IPR000571Zinc finger, CCCH-type
SMARTSM0035666308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNNLSIETDD TFASLLEFAA NNDIEGFKKW MVRAPPSTDV VGLWYIRLPG SKQLVLEQRT  60
PLMVAATYGS IDVLKLILSS SDADVNRTCG NTKSTALHCA ASGGSDNALE VVKLLLAAGG  120
DPNLADSNGR CPVDVIVVSP KSPDLKVSLQ QLLVRTSSVI EGDQAKCIPS LNSYHPVVSS  180
SPRIESPSSA FGSYSSRNAN FEEPPILCGL EKKEYLIDPT FPDIKNSIYG TDEFRMYSFK  240
IRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGIDC TRRVCFFAHT TEELRPLYVP SPHSNYSAGM DFAAAMNILP  360
GSPSSVPVMS PSPFTPPMSP SANVSPSQLS WAPSIPSLNL PGSNLQSSRL RSSINARDLQ  420
AEEFAKIGES DAQQYQLLKD LTSHYGTNSL ERPGHLKTPT PLNLEDLFVA DSLSPCYVDS  480
PFGSSVHSPT HKSALLNQFQ QQKQGILSPI NTHISANNVD HHLLQGSYGE PYSGRMSPHN  540
LERSEPISPM NSRVLMLANR EKLRSLSFRE PGTNAAALVG SPLSNWGSIS GKVDWALSSE  600
ELDKLRRSSS FDMRNSRDDP DSIWAHSPIL EPAPEIRERA STSGTWIASS NEGMSSVSSN  660
TNSLDHAALG AWLEQMQLDE LVGTSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008240870.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_008240871.10.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2P6RDZ70.0A0A2P6RDZ7_ROSCH; Putative transcription factor C3H family
TrEMBLM5WGB70.0M5WGB7_PRUPE; Uncharacterized protein
STRINGXP_008240870.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]