PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0026.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 274aa    MW: 31285.6 Da    PI: 9.2177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.6e-18117206198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k + +s+ + + +l lp +f+++h+ k  e+ ++tlede+g++   k+    ++  + l++GW++F+ +++L +gD +vF+l++  +f
  Kaladp0032s0026.1.p 117 FVKPMFQSHITGRFWLGLPQRFCKAHMPK--EDEMITLEDEDGNESPTKY--LANR--IGLSGGWRGFALDHELVDGDALVFQLIRPAKF 200
                          89************************855..5569***************..5555..45************************996666 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kaladp0032s0026.1.p 201 --KVYIIR 206
                          ..888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-25110208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-22110208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-27115206No hitNo description
PfamPF023622.3E-16117206IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562117208IPR003340B3 DNA binding domain
SMARTSM010191.9E-23117208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVASAISNYE ELRRQRLEEN KKRMEELNLS KSLYAATPKP SPAKHRKPKS ARKEVDLSPV  60
RRSRRTAGKP RPDYKEGMRL MLSTGDLMNR VYASHEFRAV ERAEQLESEL GSEYPCFVKP  120
MFQSHITGRF WLGLPQRFCK AHMPKEDEMI TLEDEDGNES PTKYLANRIG LSGGWRGFAL  180
DHELVDGDAL VFQLIRPAKF KVYIIRVNEH ENGDESNEDV AYADVDDDVV LLKPVPKAKP  240
RKVAKPSPGT RRSRRKKSTD VDEDVFLVEV LET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070755.12e-90B3 domain-containing protein At3g19184
SwissprotQ1G3M35e-74Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A2G3BVA24e-87A0A2G3BVA2_CAPCH; B3 domain-containing protein
STRINGVIT_03s0063g00620.t012e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-76B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]