PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0029s0097.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 122aa MW: 13767 Da PI: 10.6639 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.8e-19 | 12 | 73 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r++R+++t+eq+ Lee+++ r+psa ++ +++++l +++ ++V++WFqN++a++k+ Kaladp0029s0097.1.p 12 RSSRWCPTAEQVMLLEEMYKGgLRNPSAGQIHQITAHLsnfgKVQGKNVFYWFQNHKARDKQ 73 689*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 111.4 | 5e-36 | 13 | 74 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+eQ+++Lee+yk Glr+P++ +i++ita+L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0029s0097.1.p 13 SSRWCPTAEQVMLLEEMYKGGLRNPSAGQIHQITAHLSNFGKVQGKNVFYWFQNHKARDKQR 74 79***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.85E-12 | 8 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-7 | 9 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.944 | 9 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-4 | 11 | 78 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.1E-17 | 12 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.87E-4 | 12 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MCPAGTSASL SRSSRWCPTA EQVMLLEEMY KGGLRNPSAG QIHQITAHLS NFGKVQGKNV 60 FYWFQNHKAR DKQRLKKKLP LKPQHQQIFF HATSSFSPQR PVSCISFAGP LIFTPQVYIY 120 I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239462.1 | 3e-34 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
Swissprot | A2XZR3 | 1e-32 | WOX2_ORYSI; Putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A2G2YGK9 | 5e-33 | A0A2G2YGK9_CAPAN; Uncharacterized protein | ||||
STRING | cassava4.1_030827m | 2e-33 | (Manihot esculenta) | ||||
STRING | XP_009778688.1 | 2e-33 | (Nicotiana sylvestris) | ||||
STRING | OPUNC05G01220.1 | 2e-33 | (Oryza punctata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 9e-30 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0029s0097.1.p |