PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0029s0096.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 135aa MW: 14960.9 Da PI: 8.9143 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54 | 2.8e-17 | 14 | 75 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r +R+++t eq++ Leel++ +p+a ++ ++ ++l +++ ++V++WFqN++a++k+ Kaladp0029s0096.1.p 14 RAPRWCPTGEQVTLLEELYKGgLTNPTAGQIHQIVTHLsrfgKVQGKNVFYWFQNHKARDKQ 75 679*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.2 | 8.4e-34 | 15 | 76 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +RW+Pt eQ+++Leelyk Gl +P++ +i++i ++L+++Gk+++kNVfyWFQN+kaR++q+ Kaladp0029s0096.1.p 15 APRWCPTGEQVTLLEELYKGGLTNPTAGQIHQIVTHLSRFGKVQGKNVFYWFQNHKARDKQR 76 58***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.264 | 11 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.82E-11 | 13 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0023 | 13 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-15 | 14 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-6 | 16 | 75 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MCPAVGTSGA GCARAPRWCP TGEQVTLLEE LYKGGLTNPT AGQIHQIVTH LSRFGKVQGK 60 NVFYWFQNHK ARDKQRARKT LAGSEKQTAE LWMSRCSPNT HFICKNEMAF QRCNSSSSVS 120 PFSNDEVNYD CTLN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856279.1 | 6e-29 | WUSCHEL-related homeobox 3-like | ||||
Refseq | XP_022006821.1 | 7e-30 | putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A0K9R264 | 1e-27 | A0A0K9R264_SPIOL; Uncharacterized protein | ||||
TrEMBL | A0A2U1PLT1 | 1e-27 | A0A2U1PLT1_ARTAN; Homeodomain-containing protein | ||||
STRING | ERM95646 | 1e-27 | (Amborella trichopoda) | ||||
STRING | cassava4.1_030827m | 9e-28 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 4e-29 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0029s0096.1.p |