PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0027s0036.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 665aa MW: 76574.3 Da PI: 7.0969 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 71.9 | 1.5e-22 | 56 | 140 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA++ GF +r+ +s +++++e ++++f Cs+ g+++++ + ++r+etrtgC a++ +++ + ++w+++++el+HnH+++ Kaladp0027s0036.1.p 56 DFYNLYARQQGFGIRVGNSWFRSKQKERYRAKFSCSNAGFKRKSVAS-----HPRPETRTGCPAMVIIRLVDCKRWRIIEVELQHNHTFS 140 6*****************************************99887.....9**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-20 | 56 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-22 | 262 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.334 | 548 | 584 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.2E-5 | 549 | 583 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.3E-7 | 559 | 586 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MEVVSLNREP VFEEASHQGT DEDLELQDDT PGLALNRNPP QPTVGLEFDS FDEAYDFYNL 60 YARQQGFGIR VGNSWFRSKQ KERYRAKFSC SNAGFKRKSV ASHPRPETRT GCPAMVIIRL 120 VDCKRWRIIE VELQHNHTFS SEMKRVYKSH KKMVLAAKEE NKQDPVLETR IIKLYRTPTM 180 DSNFQLCANV GSGENRNHLE HSNNLELKDG DASTVYNFFC RLKLTDPNFF YLMDHDNEGR 240 LKNIFWADSR SRLTYKSFND TIMIETTCLA SKYELQLISF VGVNNHGYSV LLGCSLVASV 300 SVENFIWVLR TWLACMLQQP PQVVITDQSK LLQSAVAEVL PGARHCYSLW HIIQRLPEKL 360 GGLSGYEGIK NQFVNTVFSA LKFSEFETSW ELMIEQHGLG DNKWLQALHE DCQNWVPVYL 420 KNVFFAGLMP TQESDALNGF FDGYVHKHTT IKEFLDKYEL ALHRKLLKDA IADQESRTLA 480 SGLVTKSSFK LQLSKIYSKE IFKKFQAEVE GMYSCFNTKQ LVTNGPVITY LIKERLTGKG 540 HERIVKQYEV FYEATTMDVR CICCLFNFKG YLCRHALSVL NYIGIEEIPS QYILPRWCTD 600 FKCRLGQGHP SNDVDTNDQL QQYHHLIRHG IPFVEYGAQS EQDYKAVLKE LESIVDKVIS 660 LHDN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282775.2 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_010648676.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | M5Y3I6 | 0.0 | M5Y3I6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008219518.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0027s0036.1.p |