PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0824.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 447aa    MW: 48940.2 Da    PI: 8.4162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0824.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115379127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++++ C+++ rtG C++G++C+F+H+p
  Kaladp0024s0824.1.p 53 PGEPDCSYYIRTGLCRFGATCRFNHPP 79
                         5789*********************97 PP
2zf-CCCH38.81.6e-12100124327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Kaladp0024s0824.1.p 100 QPECQYYLKTGTCKFGATCKFHHPR 124
                          799********************96 PP
3zf-CCCH39.11.3e-12147170427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                           +C++++rtG+Ck+G++CkF+H++
  Kaladp0024s0824.1.p 147 NECSYYLRTGECKFGSTCKFHHPQ 170
                          68********************97 PP
4zf-CCCH38.61.8e-12307333127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+f+++tG Ck+G+ CkF+H++
  Kaladp0024s0824.1.p 307 PGQPECQFYMKTGDCKFGAVCKFHHPR 333
                          5789*********************96 PP
5zf-CCCH37.63.7e-12354379227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++lC f++r+G+Ck+G++CkF H++
  Kaladp0024s0824.1.p 354 GEPLCVFYSRYGICKFGPSCKFDHPM 379
                          789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-55279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5875280IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-85479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-55780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-45878IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.35697125IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-697124IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5103124IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5143170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6143171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169143171IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4149169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502306334IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6306333IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9308333IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5310335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4312334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112352380IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7352379IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9354379IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5355380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEYDSGVSMS RPPPPLTDGS SSVPASTFNQ DAMWQLNLRS SETMDFVPYP ERPGEPDCSY  60
YIRTGLCRFG ATCRFNHPPN RTMIIANARM KGEFPERVGQ PECQYYLKTG TCKFGATCKF  120
HHPRDKAGIA GRVTLNILGY PIRPNENECS YYLRTGECKF GSTCKFHHPQ PSNMMVSVRG  180
SPAYPSVNSP TNPSPQSYPG GVSNWPMSRA SFIPSPQWQG ASSYAPMILP PGVVSIPGWN  240
AYSGQMGSMS STEGQHQTVG NNQVYGTARQ SEATNPGSQG AYSQYRAGAV PIGMYALPRD  300
NVFPERPGQP ECQFYMKTGD CKFGAVCKFH HPRERVIPAP DCMLSPLGLP LRQGEPLCVF  360
YSRYGICKFG PSCKFDHPME IFRYNLPISS STDLPVRRFL GSSSGSAALS LSSDGLVEAG  420
SAKPRRLSLS ETRQMPSGDD DVNREG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812187.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2I4DYG30.0A0A2I4DYG3_JUGRE; zinc finger CCCH domain-containing protein ZFN-like isoform X1
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-177zinc finger protein 1