PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0785.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 286aa    MW: 31608.3 Da    PI: 9.0807
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0785.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-093863127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ykt+lC +f++ G C+ G +C+FaHg+
  Kaladp0024s0785.1.p 38 YKTKLCANFMA-GRCNNGRNCSFAHGR 63
                         9**********.*************96 PP
2zf-CCCH17.29.1e-0699122225
                          -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                          k+ +C+ f+ +  C+yG++C F H
  Kaladp0024s0785.1.p  99 KMQPCKIFQSGKVCPYGEKCIFQH 122
                          8899******99**********99 PP
3zf-CCCH37.83.2e-12176202127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt+ C  +  tG C++Gd+C+FaHg+
  Kaladp0024s0785.1.p 176 WKTKTCTKYETTGRCPFGDTCHFAHGQ 202
                          8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-143569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-83668IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-53763IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3753764IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-73863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-596122IPR000571Zinc finger, CCCH-type
SMARTSM003560.0197124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-697125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.29598125IPR000571Zinc finger, CCCH-type
PfamPF146080.6102122No hitNo description
SuperFamilySSF902299.29E-10173206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-15174207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821175203IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5175202IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9176202IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSSRLNAAAD SDAIVITTGL PEDHRPVVVN QSKSNMFYKT KLCANFMAGR CNNGRNCSFA  60
HGREDMRFPP PNWRQLVAQG GDHAHVSRTS GENKEQHKKM QPCKIFQSGK VCPYGEKCIF  120
QHEYPRNMRV DDSGKMIRKS EPNEYMAGAD KAMATAGARS EDAARDEDKY AKFNYWKTKT  180
CTKYETTGRC PFGDTCHFAH GQAELQAPGG HNQTRFSSLQ PPATSPVRAA PPPIDSSAAG  240
GSRDADDSSS HGYRIGPRVN WIAREKGLHK ISRVYGDWPD MPPPN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-39C3H family protein