PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0259.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 331aa    MW: 37451.6 Da    PI: 7.0983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0259.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-12192217126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Kaladp0024s0259.1.p 192 YQPDICKDYKETGYCGYGDSCKFMHD 217
                          67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9190222IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878191219IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10192217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12192222IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.2E-13267311IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.36E-12269313No hitNo description
PfamPF139209.7E-9269310No hitNo description
PROSITE profilePS5008910.498270308IPR001841Zinc finger, RING-type
CDDcd001625.59E-8270311No hitNo description
SMARTSM001842.7E-4270307IPR001841Zinc finger, RING-type
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSEPKDQPDS AQRQPEPVCK FVKASARNKN FRKRTHDEDG VEDDEKGVES AVLSKRKQQK  60
DKGLIFSTGG SKQAADADNE GGDAKQPIFQ FESSKEIQVQ HDNKATATLE TETDFSMDAR  120
AIRERVLKQA EEALKGKKKG EGDEKLYKGI HGYTDYKAGF RREHTISSEK AGGSHGPLRA  180
SAHIRVSARF DYQPDICKDY KETGYCGYGD SCKFMHDRGD YKSGWQMERE WDEAEKERKR  240
KLALKALNSD EEDDEPSDED DDEDGLPFAC FICRKSFVDP VVTTCKHYFC EHCALKHHSK  300
NKKCFVCNKP TLGIFNTAHE IRKRMASQGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-62102325113317RING finger protein 113A
5z58_M1e-62102325113317RING finger protein 113A
6ff4_t1e-62102325113317RING finger protein 113A
6ff7_t1e-62102325113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.11e-170PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-152C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY71e-169A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.11e-168(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-128C3H family protein