PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0004.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 389aa MW: 42897.5 Da PI: 7.0936

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.2e-09	138	158	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd+C FaHg Kaladp0024s0004.1.p 138 ACPEFRK-GSCRRGDTCEFAHG 158 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.5E-5	133	159	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.507	133	160	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-7	138	158	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	138	160	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4	168	191	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.639	168	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MMIGELPRTH PTVQIPPVWD PYEDPTAEIN SPFPVNGSSP SSGPFGSPDY SNPFSVPDSF 60 GSRQGYVLSN EPEPDMFDDD FSDLPLDAFS GDNFRMYDFK VRRCARGRSH DWTECPFAHP 120 GEKARRRDPR RYGYSGTACP EFRKGSCRRG DTCEFAHGVF ECWLHPDRYR TQACKDGQGC 180 RRRICFFAHS PEQLRVMSLQ SPRKGLVSSN SADSYDGSPL RRSSFDSYIG GICNNNKASS 240 FGSSSPPTSP PSSPPPLSSS YNSVHELVSN MRNLQLAKAK LSTGSVWGGM SSMGSPRGSS 300 NLRPGFLSLP TTPTRIPARS GLAQFEQWDS NNNSIRACEE EPVMERVESG RDLRAKIYAK 360 LSKENSFGPV NGSQLTDPDV GWISDLVE*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MMIGELPRTH PTVQIPPVWD PYEDPTAEIN SPFPVNGSSP SSGPFGSPDY SNPFSVPDSF  60
GSRQGYVLSN EPEPDMFDDD FSDLPLDAFS GDNFRMYDFK VRRCARGRSH DWTECPFAHP  120
GEKARRRDPR RYGYSGTACP EFRKGSCRRG DTCEFAHGVF ECWLHPDRYR TQACKDGQGC  180
RRRICFFAHS PEQLRVMSLQ SPRKGLVSSN SADSYDGSPL RRSSFDSYIG GICNNNKASS  240
FGSSSPPTSP PSSPPPLSSS YNSVHELVSN MRNLQLAKAK LSTGSVWGGM SSMGSPRGSS  300
NLRPGFLSLP TTPTRIPARS GLAQFEQWDS NNNSIRACEE EPVMERVESG RDLRAKIYAK  360
LSKENSFGPV NGSQLTDPDV GWISDLVE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275926.1	1e-145	PREDICTED: zinc finger CCCH domain-containing protein 23
Swissprot	O82199	1e-106	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A5BHR5	1e-143	A5BHR5_VITVI; Uncharacterized protein
TrEMBL	F6H381	1e-143	F6H381_VITVI; Uncharacterized protein
STRING	VIT_04s0008g00610.t01	1e-144	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	7e-98	C3H family protein

Link Out ? help Back to Top
Phytozome	Kaladp0024s0004.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]