PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0102.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 291aa    MW: 31699.2 Da    PI: 4.9776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102132531055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Kaladp0022s0102.1.p 213 RKRRERINERLKTLQGLVPNG-----TKVDISTMLEEAVQYVKFLQ 253
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.377203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14203268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12208264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.82E-12212257No hitNo description
PfamPF000103.8E-8213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQLGGGSAM YEGEWSCLSK MYTTTEESDF MAQLLGGFNP PPFAQTLGNA TRNFIDDNGG  60
FADPADDSAS SSFQLTQETS IFFPVCCEDD GEAECGANLS LSVASDPKSP EIKPVRDSAD  120
DKYVASSIKR AGKKSRNAED ATDRRNVKPR KTRKSDSRSE VDKDGAANNS QSSSLTCSET  180
GESSSKPQPA LNLNGRTRAG RGSATDPQSL YARKRRERIN ERLKTLQGLV PNGTKVDIST  240
MLEEAVQYVK FLQLQIKLLS SDEMWMYAPL AYNGMETGLF DAKNLRVPPR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-54ROOT HAIR DEFECTIVE 6-LIKE 2