PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0020s0040.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family FAR1
Protein Properties Length: 826aa    MW: 93399.5 Da    PI: 7.0505
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0020s0040.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.91e-1539113290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +Y++YA+++GFs+++ + ++ k +g i++ +f Cske +++++ +               C+a l++++++ g+w+vtk++++HnH+++
  Kaladp0020s0040.3.p  39 YYDAYARRAGFSTSVGQYNRAKPDGPIVSWDFACSKEVFKRKNADC--------------CNAALRIERKDPGVWVVTKFVEDHNHSIV 113
                          8**************************************9997665..............**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.5E-1339113IPR004330FAR1 DNA binding domain
PfamPF105513.5E-30241333IPR018289MULE transposase domain
PfamPF044341.0E-11518552IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.597518554IPR007527Zinc finger, SWIM-type
SMARTSM005751.4E-8529556IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MIMAETCPQG ELHDDRDDED AHKPHVGMKF ESVDSAKSYY DAYARRAGFS TSVGQYNRAK  60
PDGPIVSWDF ACSKEVFKRK NADCCNAALR IERKDPGVWV VTKFVEDHNH SIVRPNKVYH  120
LPTRRHFAGS KNNGETAQAA TDRPVSMDGN PMSFESHTNV SSGEQFPTTR SSGSMSFTMP  180
YSQRKTLGKD AHDLLGYFKN MQAENPGFFY AIQVDEGNRI TNVFWADARS RTAYNHFGDA  240
VIFDTMYRPN QYQVSFAPFT GINHHGQMVL FGCALILDES EASFTWLFST WLSAMNGRPP  300
VSFTTDQDRA IQAAVSQVFP KTRHCICKWH ILREGRERLA HVFIAHPPFH GELYSCINFS  360
ETIEEFESSW NSLLDKYNLQ KNEWLQAVFK ARNQWVPVYF RDTFFAALSS NHGVGSIFDQ  420
YVNQQTSLPL FFRQYEMAVE RSLEEEIEAD YDTINNTPFL KTPSPMEQQA ANLYTKTVFM  480
KFQEELVETF IYTANKIDVD GPVTKFRVVK YEHDHKAYTV SMNISEMKAS CSCKMFEYSG  540
ILCRHILTVF TVTNVLTVPP NYILKRWTRN ARTGAGMDEQ NVNPHCAESL TARFNGICRE  600
AVKLAEHAAI CAESYDVAIN ALRDAGKKIA VLKRNSTKPL FTKRHRSGNI QVDSNMNTAL  660
LGVSETPSLW PWQEPNLNHS DSNYAGLSVA DLNQTQPTMA VASMPDPNET VLTYYKSMTW  720
VIENRTSAIA SKVAVIKLKL QDYAKTPADE TEVQFRVTKV SLEPMLKSMS FISQQLSAPS  780
NKVAVINLKL QDMQTTTGGT ELKFQVSRST LASLLASMDC IQEYL*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015876191.10.0protein FAR1-RELATED SEQUENCE 3-like
RefseqXP_024927403.10.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A2R6R1D80.0A0A2R6R1D8_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRINGVIT_13s0047g00330.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]