PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0129.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 132aa    MW: 15199.5 Da    PI: 10.4142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0129.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-163791799
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         ++p kf++ +   +e s   tl  +sg sW+ k+  + + g+++l+ GW+eF k+n Lk ++++vF+++g+++f  +v++f++
  Kaladp0018s0129.4.p  3 RIPPKFVNLIW--EELSSVATLVGPSGDSWSTKV--CHSEGHVYLKCGWQEFYKDNLLKGNEMLVFTYKGKMRF--HVQIFDT 79
                         69999995553..4567789**************..9********************************99999..*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010197.7E-5180IPR003340B3 DNA binding domain
PROSITE profilePS5086313.831180IPR003340B3 DNA binding domain
CDDcd100171.26E-13378No hitNo description
PfamPF023621.2E-13379IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-20380IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-19380IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MKRIPPKFVN LIWEELSSVA TLVGPSGDSW STKVCHSEGH VYLKCGWQEF YKDNLLKGNE  60
MLVFTYKGKM RFHVQIFDTS AVERMQVVVS KPDDKKDSAV QKRKHDEKND STVPKRQRGR  120
PRKHPISPPK F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.15e-14B3 family protein