PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0129.10.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 154aa    MW: 17750.6 Da    PI: 10.3589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0129.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.7e-17191011099
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                           +  +  +++p kf++ +   +e s   tl  +sg sW+ k+  + + g+++l+ GW+eF k+n Lk ++++vF+++g+++f  +v++f+
  Kaladp0018s0129.10.p  19 SIDE-KMRIPPKFVNLIW--EELSSVATLVGPSGDSWSTKV--CHSEGHVYLKCGWQEFYKDNLLKGNEMLVFTYKGKMRF--HVQIFD 100
                           3444.49*******6663..4567799**************..9********************************99999..*****9 PP

                           S CS
                    B3  99 k 99 
                           +
  Kaladp0018s0129.10.p 101 T 101
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.16E-159100No hitNo description
PROSITE profilePS5086312.6759102IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-2310102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-2210102IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-1411102IPR003340B3 DNA binding domain
PfamPF023629.4E-1512101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MRMGTCVGKR FFKLMFGDSI DEKMRIPPKF VNLIWEELSS VATLVGPSGD SWSTKVCHSE  60
GHVYLKCGWQ EFYKDNLLKG NEMLVFTYKG KMRFHVQIFD TSAVERMQVV VSKPDDKKDS  120
AVQKRKHDEK NDSTVPKRQR GRPRKHPISP PKF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.17e-17B3 family protein