PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0314.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38096.1 Da PI: 4.5926 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 279 | 319 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++L +Av+Y+k Lq Kaladp0016s0314.2.p 279 RKRREKINERLRILQGLVPNG-----TKVDISTMLDEAVHYVKFLQ 319 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-14 | 268 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.71 | 269 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-12 | 274 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.61E-11 | 278 | 323 | No hit | No description |
Pfam | PF00010 | 1.7E-6 | 279 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEHFGAMFEL SGMYTTEEES NFLTQLLGEF SPAVGLNGES SDLSVSETNF WPIQTCVSNV 60 ASRRVDDDSF VYTSDPSCFS SQETSAYSDG SDMTKFLHGK GQGAYYQHLG DAGNCFAGDE 120 IPSYYNSVDF SFEEEENVSS TGYVCTDLLM QLDSAKVEAG VGESLPSPIA FRGTKSETQA 180 LDDAVEEKGA RPPAESKKRP RISTEAQKSK RSVKLRKSKK AADVDEDKSD SSGGSLLRQA 240 STSNSSKDDT GADEGSTPPS GKTRANRGSA TDPQSLYARK RREKINERLR ILQGLVPNGT 300 KVDISTMLDE AVHYVKFLQL QIKLLSSDEM WMYAPLAYNG MALGLDIKI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 283 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 1e-52 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0314.2.p |