PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0314.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 350aa    MW: 38096.1 Da    PI: 4.5926
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0314.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-092793191055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR++iN+++  L+ l+P+      +K++ +++L +Av+Y+k Lq
  Kaladp0016s0314.1.p 279 RKRREKINERLRILQGLVPNG-----TKVDISTMLDEAVHYVKFLQ 319
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.16E-14268334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.71269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-12274330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.61E-11278323No hitNo description
PfamPF000101.7E-6279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEHFGAMFEL SGMYTTEEES NFLTQLLGEF SPAVGLNGES SDLSVSETNF WPIQTCVSNV  60
ASRRVDDDSF VYTSDPSCFS SQETSAYSDG SDMTKFLHGK GQGAYYQHLG DAGNCFAGDE  120
IPSYYNSVDF SFEEEENVSS TGYVCTDLLM QLDSAKVEAG VGESLPSPIA FRGTKSETQA  180
LDDAVEEKGA RPPAESKKRP RISTEAQKSK RSVKLRKSKK AADVDEDKSD SSGGSLLRQA  240
STSNSSKDDT GADEGSTPPS GKTRANRGSA TDPQSLYARK RREKINERLR ILQGLVPNGT  300
KVDISTMLDE AVHYVKFLQL QIKLLSSDEM WMYAPLAYNG MALGLDIKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-52ROOT HAIR DEFECTIVE 6-LIKE 2