PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0061.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 346aa    MW: 38151.5 Da    PI: 8.0319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.85.8e-145599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd  l+d v++ G g+W +Ia ++   Rt k+c++rw + 
  Kaladp0016s0061.1.p 55 KGPWSPEEDSCLKDFVTRNGVGRWGLIAGELD--RTSKSCRLRWCNQ 99
                         79*****************************8..**********985 PP
2Myb_DNA-binding38.33.1e-12107150247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          g++T  Ede+++   ++ G++ W+ Ia+ +  +Rt++q+k+rw++ 
  Kaladp0016s0061.1.p 107 GPFTRKEDEIIISMYEERGSK-WSQIAKALE-RRTDNQVKNRWNSN 150
                          89*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.48850104IPR017930Myb domain
SuperFamilySSF466899.73E-2753147IPR009057Homeodomain-like
SMARTSM007178.5E-1254102IPR001005SANT/Myb domain
PfamPF002493.3E-125599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2056107IPR009057Homeodomain-like
CDDcd001672.86E-105798No hitNo description
SMARTSM007172.6E-10105153IPR001005SANT/Myb domain
PROSITE profilePS5129416.829106155IPR017930Myb domain
PfamPF002494.6E-11107150IPR001005SANT/Myb domain
CDDcd001673.39E-9108151No hitNo description
Gene3DG3DSA:1.10.10.609.2E-21108153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVLINNSHLN LLDDMELSHL VNLIASNSNV DLNQDADEDQ NNNSSDEHER PNGRKGPWSP  60
EEDSCLKDFV TRNGVGRWGL IAGELDRTSK SCRLRWCNQL SPDIYHGPFT RKEDEIIISM  120
YEERGSKWSQ IAKALERRTD NQVKNRWNSN LSKVHRRSQK KVKSAKGSRA NPIRGNSKGS  180
RRPASFKSAS TRPAPTLVSI STAGPFADQV SPAASLKISE ARQFPGSRYR DPASLYLPPA  240
PAAYPDNSAP FACVEAYLPP AFVTPAAHFA SQVHQPANPS PSPAPAFNHL TSLSLFPPGH  300
ETDDVNYLNQ FPDHPAPLEN WTGLMEEIIG VDMEQANGAG RKHTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22511533106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27920.13e-30myb domain protein 0