PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0116.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 777aa    MW: 84561.7 Da    PI: 6.3467
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0116.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-20625722296
                          EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +kvl++sdv+++gr+vlpkk ae+h  ++  + ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fvk+ngL+egDf+v++  +
  Kaladp0015s0116.1.p 625 QKVLKQSDVGSLGRIVLPKKEAETHlpQLTARDGINIAMEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVKSNGLQEGDFIVIY--S 711
                          79*************************999999********7778*******99777777777777.********************..6 PP

                          S.SEE..EEEE CS
                   B3  87 r.sefelvvkv 96 
                          + ++++++++ 
  Kaladp0015s0116.1.p 712 DiKCGKYMIRG 722
                          77999888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-27618730IPR015300DNA-binding pseudobarrel domain
CDDcd100153.74E-34622723No hitNo description
SuperFamilySSF1019367.65E-22623717IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.6E-19624726IPR003340B3 DNA binding domain
PROSITE profilePS5086310.348624726IPR003340B3 DNA binding domain
PfamPF023622.7E-16625721IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MVTKAGVGLE EGGRRSDNLM HAAPPDAVEV DGDDVMVDFS CFGGYSSAEA AMEEADHQDL  60
MENAAAIFCD DLIPPLPDFQ CMSSSSSSSS STVVKPVAYR STASSSVSSS SSSWAVLRSD  120
GEEQHNAGGE CINNHQPQQV ALSSTASMEM HPQSGQSNRL DEGDDIGCMD VMETLSYMDL  180
LDENGQVWDY SDSPVFDCNR EEAFQCNREA ENQPQQPHAA AATASEFVHE KGDNSEGLDK  240
SEDLAMVFFE WLKSNKESVS AEDLRSIKLK KSTVESAAKR LGNGKEGMKR LLQLILEWVQ  300
QHQLQRKRRR EEEAAAAATM VGGQAGFPNQ PYPVQYPTQP FQSPDADFSN SNLQPDPIGF  360
TGAVNPPPWS VGSGAGFDHM VAVGVPAAGA GYVGGGDPFG HLSNMVDQPA ATPWPAAAPP  420
FCMNYSDNAR SVQNLSPVAL QQAYPFGAGA FNQYPYQYYP AVGNGSTFNG PASDDGLART  480
GSSATKEARK KRMARQRRFS SHHRHHYHHH NHNSSSNSHG HHHVNNGQSN QMNMAVGTSP  540
RGRVNMEENY ANIGQPPGGG NWACWGNAAA PPPAPLPLVP NVAKSFQVNE VCHSPLQQPQ  600
NYQRPNAPER RPGLKAEKNL RFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PQLTARDGIN  660
IAMEDIGTSN VWNMRYRFWP NNKSRMYLLE NTGDFVKSNG LQEGDFIVIY SDIKCGKYMI  720
RGVKVRQQGP RPDNRRSGKA LKKNPASTSN GPSPSPNNTP HKETSPKPDM IKELEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-376207281109B3 domain-containing transcription factor FUS3
6j9b_D2e-376207281109B3 domain-containing transcription factor FUS3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305309RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-68B3 family protein