PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0115.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 365aa    MW: 40825.5 Da    PI: 7.1403
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0115.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.61.7e-094087154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                         s++kGV     +g W A+I+       + +r++lg+f ++ eAa a++ a+ kl+
  Kaladp0015s0115.1.p 40 SRFKGVV-PQISGHWGAQIYA------NhQRIWLGTFKSEREAAMAYDSAAIKLR 87
                         6789996.666899****999......44**********99************98 PP
2B385.35.2e-27179275185
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f k ltpsdv+k++rlv+pkkfa ++            + + ee++ l++ d s r W+++++y+++s+++v+t+GW++Fvk++gL+++D
  Kaladp0015s0115.1.p 179 FSKGLTPSDVGKLNRLVIPKKFAVKFfpgimtsscessEVEDEEDVLLSFHDASMRLWKFRYCYWRSSQSFVFTRGWNRFVKDKGLRAKD 268
                          7899****************************99999855667999******************************************** PP

                          EEEEEE- CS
                   B3  79 fvvFkld 85 
                          +++F++ 
  Kaladp0015s0115.1.p 269 VITFSMC 275
                          ****954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-124098IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-144197IPR001471AP2/ERF domain
PROSITE profilePS5103216.0154197IPR001471AP2/ERF domain
SMARTSM003804.4E-1841103IPR001471AP2/ERF domain
PfamPF008473.1E-54187IPR001471AP2/ERF domain
CDDcd000183.75E-204199No hitNo description
Gene3DG3DSA:2.40.330.102.0E-29174273IPR015300DNA-binding pseudobarrel domain
CDDcd100178.13E-22177274No hitNo description
SuperFamilySSF1019361.44E-24177275IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-24179275IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548179288IPR003340B3 DNA binding domain
SMARTSM010191.0E-16179284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGANCDPDDA GSVSSGGVKR ARYGSNNSAS SASAAVATTS RFKGVVPQIS GHWGAQIYAN  60
HQRIWLGTFK SEREAAMAYD SAAIKLRSSC DSHRNFPWSP VSMQEPFFQK SFTTEAVLSM  120
IKDGSYSAKL SDFLSQRQQR GEQTEDDDIN ADGSLNNNSE TIITVRSDQM EKFTCRKLFS  180
KGLTPSDVGK LNRLVIPKKF AVKFFPGIMT SSCESSEVED EEDVLLSFHD ASMRLWKFRY  240
CYWRSSQSFV FTRGWNRFVK DKGLRAKDVI TFSMCDAAAG CVNDPKPSSF YLIDVTYRQH  300
DKAAGGNEVE REDVVEREDA DGRRFHVSRS SEVVEEEKHV VDDASLKQSD KNKKWGFRLF  360
GVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2917827713105DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886250.11e-105AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6888e-93RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2N9EEX01e-104A0A2N9EEX0_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-88RAV family protein