PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0012s0002.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 338aa    MW: 37606.9 Da    PI: 10.4093
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0012s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.9e-31268325359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Kaladp0012s0002.2.p 268 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 325
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-17219264IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.3E-33254326IPR003657WRKY domain
PROSITE profilePS5081129.631261327IPR003657WRKY domain
SuperFamilySSF1182906.54E-27264326IPR003657WRKY domain
SMARTSM007742.2E-38266326IPR003657WRKY domain
PfamPF031065.8E-27268325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDEAEEANKA AVESCHRLLG LLSQPQSHAN GRNLMAETEL TVRSFKKVVS MLDRKLGHAR  60
FRKSKNLPSP PLFPQNVLLE GQAYRQENNL NPINASKSRM FDLLEKKSLP ESGLGLRNTT  120
GFGNVAMEMS SSGKSPVQVT VQTASGYQIL QQQQMKQQAE MMMMYQKRSS GISLNFDSTS  180
CTPTMSSTRS FLSSLSMDGS SFQLIGASRS MDQNSHPHRR KCSSRGEDGS VKCGSSSRCH  240
CSKKRKHRIK RSIKVPAISN KLADIPPDDF SWRKYGQKPI KGSPHPRGYY KCSSMRGCPA  300
RKHVERCLEE PSMLIVTYEG EHNHPRIPPQ ISQSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20259329775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672672.11e-144probable WRKY transcription factor 21
SwissprotO043361e-102WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A059D2M11e-142A0A059D2M1_EUCGR; Uncharacterized protein
STRINGXP_010038933.11e-142(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.12e-65WRKY DNA-binding protein 39