PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1214.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 349aa    MW: 37821.6 Da    PI: 10.4898
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1214.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30272329359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+ +++tYeg+Hnh 
  Kaladp0011s1214.1.p 272 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPTQLIVTYEGDHNHA 329
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.9E-16224268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.4E-32259330IPR003657WRKY domain
PROSITE profilePS5081130.159265331IPR003657WRKY domain
SuperFamilySSF1182905.49E-26267330IPR003657WRKY domain
SMARTSM007746.9E-36270330IPR003657WRKY domain
PfamPF031061.1E-25272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAVELLRMGY RAAATENNLP AKMEEAASAG LQSVEQLIRL LSQRQQQMER SNSSGNRASE  60
SSDLDYGAVA DVAVNKFKTM ISLLDRPRTG HARFRRAPVT QKAVDPVAQT SQRSEKMEEK  120
PTAQSASARA FTASTSSQRL PPLPQNHQHH NHHNSHPHKI AHSSMTKTPS KDSIATISFS  180
AASSFVSGLS GETESVQPSM SSGFQFTHIS QSSGKPPLSS SSLKRKCSSM DDSARCGGSS  240
ARCHCSKKRK SRVKRVVRIP AISLKMADIP PDDFSWRKYG QKPIKGSPHP RGYYKCSSVR  300
GCPARKHVER AVDDPTQLIV TYEGDHNHAM TSVKEAAAAA AALVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19258330273WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568783.11e-130PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-91WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U8GJ781e-128A0A1U8GJ78_CAPAN; probable WRKY transcription factor 7
STRINGevm.model.supercontig_21.1591e-125(Carica papaya)
STRINGXP_009604893.11e-126(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.15e-50WRKY DNA-binding protein 15