PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1175.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 369aa    MW: 40904.7 Da    PI: 6.2432
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-161462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl
  Kaladp0011s1175.1.p 14 KGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding37.45.8e-1269111246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kaladp0011s1175.1.p  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                          569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.847962IPR017930Myb domain
SuperFamilySSF466899.19E-2611109IPR009057Homeodomain-like
SMARTSM007176.5E-121364IPR001005SANT/Myb domain
PfamPF002496.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-241569IPR009057Homeodomain-like
CDDcd001675.19E-91662No hitNo description
PROSITE profilePS5129421.66663117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.4E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
CDDcd001673.07E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEHNHQAR RIDGLKQEIS LMMTMNKEAV DNSMVLSSNC NNTETPYWPE LPVLAPIPYS  180
NQDARSLNDH ASIRRLLMKL GGRFSSDDES IHQGGNMEQL LPINVMSSAP DVTIYPQEGA  240
PSYLAATSSP GALNNPTYPF ENPQFMMEGS GVNLLQGHDQ HQPNHDIGQL VGFNSSSHGM  300
VDGLEFLYGD ELYNNRNGGE GMTYGDMLAR SGSYSVYDTQ PVADSTNSNY DQLGSSFDEL  360
RYSGGVAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071830.11e-130PREDICTED: transcription factor RAX3
TrEMBLA0A438F8Q31e-129A0A438F8Q3_VITVI; Transcription factor RAX3
TrEMBLE0CNX01e-129E0CNX0_VITVI; Uncharacterized protein
STRINGVIT_18s0001g08470.t011e-130(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-81myb domain protein 84