PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0962.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 24002.2 Da PI: 9.0235 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.6 | 1.6e-19 | 8 | 53 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W+++Ed lv++v+q+G+++W+ I++ ++ gRt+k+c++rw + Kaladp0011s0962.1.p 8 RGSWSPQEDATLVKLVQQHGPRNWSMISAGIP-GRTGKSCRLRWCNQ 53 89******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 62 | 104 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+++ +a++ +G++ W+tIar+++ gRt++ +k++w++ Kaladp0011s0962.1.p 62 PFSPSEDDIITRAHATHGNR-WATIARMLP-GRTDNAIKNHWNST 104 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.085 | 3 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 7 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.83E-30 | 7 | 101 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-18 | 8 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 9 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-15 | 10 | 52 | No hit | No description |
SMART | SM00717 | 1.0E-15 | 59 | 107 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.155 | 59 | 109 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 61 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-13 | 62 | 105 | No hit | No description |
Pfam | PF00249 | 8.5E-15 | 62 | 104 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAESEAVRGS WSPQEDATLV KLVQQHGPRN WSMISAGIPG RTGKSCRLRW CNQLSPSVHH 60 RPFSPSEDDI ITRAHATHGN RWATIARMLP GRTDNAIKNH WNSTLKRRRK RMRRTSSVSS 120 HPPQLNISSD RGGPDDGDSE AALLETDLTL SPPGECLPPP DEKKGLAVAE EETCLMKLMQ 180 KMIAAEVRNY IDQLRAQGGL GTLLLHSAVL DHHHHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-38 | 5 | 108 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 113 | KRRRKRMRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015866980.1 | 1e-81 | transcription factor MYB77-like | ||||
TrEMBL | M5XTD9 | 2e-77 | M5XTD9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ22310 | 3e-78 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-49 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0962.1.p |