PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0929.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 191aa    MW: 20471.8 Da    PI: 6.7609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0929.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-191666155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr++  +gr++AeIrdp++   ++r++lg+f++ae+Aa+a++aa+ +++g
  Kaladp0011s0929.1.p 16 PRFRGVRRRT-WGRYAAEIRDPVK---KARVWLGTFDSAEDAARAYDAAAVSFRG 66
                         689****877.**********654...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.7E-121666IPR001471AP2/ERF domain
CDDcd000186.68E-171673No hitNo description
Gene3DG3DSA:3.30.730.103.5E-311775IPR001471AP2/ERF domain
PROSITE profilePS5103223.5251774IPR001471AP2/ERF domain
SMARTSM003808.2E-371780IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-221776IPR016177DNA-binding domain
PRINTSPR003679.3E-101829IPR001471AP2/ERF domain
PRINTSPR003679.3E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKEKSLAAA TPKSQPRFRG VRRRTWGRYA AEIRDPVKKA RVWLGTFDSA EDAARAYDAA  60
AVSFRGSKAK TNFPSSVPSS PPVHREDFLP HQHRPTISGM SSTVESFNGP RASNPGLLMA  120
RKFSAVAVRE EGDCRSDCDS SSSVIDYCEG AGDDGDFSCS KVLSFDLNLP PPSDAALEGD  180
GDLIATDLCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-201879668ATERF1
3gcc_A1e-201879668ATERF1
5wx9_A3e-2017831481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756423.16e-44ethylene-responsive transcription factor 3-like
TrEMBLA0A0V0HV086e-49A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGGorai.002G092900.11e-40(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.13e-11ERF domain protein 10