PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0794.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 386aa    MW: 42019.6 Da    PI: 8.2168
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0794.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.11.1e-31220275258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           p+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Kaladp0011s0794.1.p 220 PPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAIRRARGTGGRF 275
                          59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.1E-35217278IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.814218278IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-27221275IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-24221243IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860223243IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-24252275IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MKVYLYAGLI AVCVTVSSLW KLKEEIYEVE KPVRFPSGLL HPFMVYGNMP TKPESVNRPS  60
IGLHGNPSPA VYSEPWWCST GYNPAQSVVA TVNAGHQPSG SLESNTVQSF SNSGPNEDDE  120
DNDVSKKSQQ DAARQQERSL PGDGNNIMSV ALTSATDNCI TQQPQLELVG HSVACAPGPF  180
QDPYYGGLMS AYGPQPMIYP HQLGPQHARM PLPHEVAQEP PVYVNAKQYH GILRRRQSRA  240
KAELEKKLIK VRKPYLHESR HQHAIRRARG TGGRFAKKTD AENGGPAATQ SVSSSGSELM  300
PSDSAETWNS PMGRDVAKGS QAQMQTEQHK QAATDQNGGY GNGSAFQPAS YHSGNRNEEN  360
DCSSQQWGSI SGNNKATSQR RFAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18219275258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446125.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446126.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446127.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446128.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006470619.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470620.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470621.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470622.11e-100nuclear transcription factor Y subunit A-1
TrEMBLA0A067F5722e-98A0A067F572_CITSI; Uncharacterized protein
TrEMBLV4U5J82e-98V4U5J8_9ROSI; Uncharacterized protein
STRINGXP_006470619.13e-99(Citrus sinensis)
STRINGXP_006446125.13e-99(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.32e-61nuclear factor Y, subunit A1