PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0568.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 558aa    MW: 62046.1 Da    PI: 4.5589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0568.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.53.9e-51111372128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          +pGfrFhPtdeelv++yLk+kv g+ +++ ++i+e+d+yk+ePwdLp k ++k+++ ewyfFs  dkky +g+++nrat++gyWk+tgkd
  Kaladp0011s0568.1.p  11 APGFRFHPTDEELVKFYLKRKVCGRAFRF-DAIAEADVYKCEPWDLPdKsALKSRDLEWYFFSGLDKKYGHGSKTNRATERGYWKTTGKD 99 
                          69*************************99.99**************96346667777********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v++ +  +vg+kktLv++ grap+ge+t+Wvmheyrl
  Kaladp0011s0568.1.p 100 RPVHN-NLVVVGMKKTLVYHIGRAPRGERTNWVMHEYRL 137
                          ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.09210160IPR003441NAC domain
SuperFamilySSF1019415.1E-6010160IPR003441NAC domain
PfamPF023655.1E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGGRDPANFI APGFRFHPTD EELVKFYLKR KVCGRAFRFD AIAEADVYKC EPWDLPDKSA  60
LKSRDLEWYF FSGLDKKYGH GSKTNRATER GYWKTTGKDR PVHNNLVVVG MKKTLVYHIG  120
RAPRGERTNW VMHEYRLADS ELEKAGVSQA SFVLCRIFQK SGPGPKNGEQ HGAPFIEEEW  180
EDEDEVLVTG GEQSQDEALI ADGAYLETDD LDQLIDFNVS PGNYSLQTNY CYGGSSNQFE  240
VSRELSEEGQ KPSVGAHENL NQSKLPVTEQ QCFGELKPYE VEENPPMADY FAKPDDIASH  300
DVNYLLDEPY LNGNYDEVHR EGLYLETEDL LTPIEADPSS FDMLHEYLAD FDENDEIFYM  360
PPNNSKAETE TDIPLDIVNE QAEGQTQKLV MASKHLVNAH GGDDDGIASS NQNCTKFGSG  420
SKNPVAEHAK CLLESIPAPP AFAAEFPSKD AALRLASAMQ SQNSVNVVAN MMHPRNTGTA  480
NNGLSWSFDK NGKVQLIFSL SVGQGSGRLD PAACLDGYLS SKSKSATWRC WIYLTLFWVS  540
ILVISMKIGT CVVDAKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-451016017165NO APICAL MERISTEM PROTEIN
1ut4_B8e-451016017165NO APICAL MERISTEM PROTEIN
1ut7_A8e-451016017165NO APICAL MERISTEM PROTEIN
1ut7_B8e-451016017165NO APICAL MERISTEM PROTEIN
4dul_A8e-451016017165NAC domain-containing protein 19
4dul_B8e-451016017165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031618.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
TrEMBLA0A2I4KK981e-174A0A2I4KK98_POPTR; NAC family protein
STRINGPOPTR_0010s23650.11e-174(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-120NAC domain containing protein 2